Sebastian’s Blog & Website

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My PhD Viva Voce on Video

Few days ago I found enough time to write about the last stages of my PhD process, namely my viva voce and what followed afterwards.

A friend of mine, Lukasz, told me that he still had the videos he recorded during my presentation. He was so kind to publish them on Vimeo.

Here they are:

Sebastian’s PhD Deffence 1 from Lukasz Porwol on Vimeo.

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My PhD Viva Voce (a.k.a PhD thesis defense)

Few months ago (in May) I had to face the most important point on my way to PhD – the viva voce (i.e., “thesis defense”).
I could not get myself around posting about that, mostly due to many activities related to our startup and to the final procedures related to the thesis itself.

Now, as my PhD thesis manuscript has reached the camera ready version, has been copy-edited (thanks Miechelle and Andrzej), printed, hard-bound (thanks Lukasz and Iza), and submitted (thanks Hilda for taking over from there), I can finally devote some free mind-cycles to a not-so-strictly-phd-related matters, e.g., taking care about my blog, which was not “watered” for quite some time.

As it was getting closer and closer to the this point in time, I felt like I had to finally let you all know how it went. So here is the story; I will take from where I left it in May, a week before the viva voce.

We (Ewelina was with me all the way to support and help me) flew in to Cork and then went up to Galway just before the weekend (May 16th-17th). I longed to see all our friends in Galway, but … first things first – I had to polish up my presentation for the viva (thanks Stefan for your valuable comments).
On Saturday we picked up Daniel Schwabe from the Shannon airport and visited the Bunratty Castle near Limerick. On Sunday, my second reviewer – prof. Henryk Krawczyk, arrived in Galway.

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Next week: my PhD defense (Semantic Digital Libraries )

The day has come to wrap up the research I have been doing for the last couple of years. After closing the write up and submitting my thesis in February this year, my PhD defense is approaching very soon.

Here is some information about it. If you are around Galway next Monday – you are welcome to come and watch my presentation at the open session.

When: May, 18th 2009

Where: Conference Room, DERI, NUI Galway (IDA Business Park, Lower Dangan, Galway, Ireland)

Schedule:

  • 10.00 – 10.30 – Open session
  • 10.30 – 11.30 – Closed session – you & the 3 examiners (fingers crossed!)
  • 11.30 – 12.00 – Closed session – examiners only

Abstract:

Until recently, libraries were the prime source of information for both students and scholars. Now this information is published using online with digital library systems. Current digital libraries have to provide efficient information discovery solutions to adapt to the fast development of new technologies; they also have to cater to the current generation of students. The research on the Semantic Web and online social networks contributes to the digital libraries domain by supporting interoperability with formal semantics, improving interlinking of information and encouraging users to contribute and share knowledge.

Semantic technologies support more flexible information management than that offered by classic digital libraries. Information on library resources can be gathered from heterogeneous sources, including contributions from the communities of library users. These annotations, combined with legacy data, build the foundations for more efficient information discovery in digital libraries.

This thesis reviews architectures, abstract models, metadata standards, and various technologies for building digital library management systems. We derive requirements for advanced digital libraries and propose an architecture model and a set of ontologies for semantic digital libraries. Finally, we present information discovery services using semantic and social technologies, and the prototype implementation of a semantic digital library that fulfills the aforementioned requirements.

Our hypothesis is that semantic and social technologies applied to a digital library management system deliver more efficient information discovery solutions, while the library users become more satisfied and can remember more of the information they have learned when using the library. We present two information discovery services that use semantic and social technologies; we also show a prototype of a semantic digital library. We support our hypothesis by discussing the results of initial evaluations of both services and a comprehensive evaluation of the semantic digital library prototype.


If you are interested in doing a PhD yourself check a collection online PhD programs.


Evaluation of social and semantic technologies in digital libraries

I would like to invite everyone to take part in the evaluation of the semantic and social technologies for digital libraries. The evaluation benchmarks search and browsing solutions delivered in our semantic digital library called JeromeDL [http://www.jeromedl.org/] against standard services offered by one of most popular open-source libraries – DSpace.

Please feel free to enter http://q.digime.name/ and help us with evaluating our prototype solutions.


Looking for a Researcher – Software Developer [JeromeDL project] (position closed)

Researcher – Software Developer

(please note that the recruitment process is now closed)

The Digital Enterprise Research Institute (DERI) is the largest semantic research organisation in the world. DERI offers a stimulating, dynamic, multi-cultural research environment with excellent ties to research groups worldwide. This is a unique opportunity to join the effort of bringing research prototypes to industry ready within DERI, in collaboration with our research and industrial partners will play a key role in making next-generation semantic computing systems a reality. DERI offers a unique opportunity to develop one’s career in the world-wide renown and industry strong research environment.
 
The Person
• Ability and willingness to work in a international team based environment developing state of the art software solutions on time and to specification
• Motivated and proactive attitude to take ownership and initiative in all work assignments
• Excellent analysis and problem solving skills
• Strong design, development & testing skills
• Excellent communication skills, verbal and written
• Excellent command of English, both verbal and written
• Ability to tackle wide and varied tasks
• Creative Thinking

Essential Skills
• Solid industry experience using many of the following:
• Very strong core Java
• Web based UI: JSP/Servlets/Applets/JavaScript/AJAX
• Good expertise with automated testing frameworks such as JUnit
• Good knowledge and experience with Semantic technologies
• Good knowledge of object-oriented design principles and design patterns with an understanding of their application within Java
 
Desirable Experience & Background (inc. qualifications):
• Knowledge/Experience with distributed systems and service-oriented design principles
• Knowledge of user interface design principles
• Experience/Knowledge of document processing and search techniques
• Experience/Knowledge of XML processing and related technologies
• A relevant post graduate degree (MSc) or relevant industrial experience

The position is full-time, located at DERI Galway. The duration of the post will be for 9 months in the first instance. The salary is commensurable with qualifications and experience. An early start date is preferable as the position is now open. A panel for future similar positions may be formed.
Informal enquiries about these positions may be made to:
Sebastian Ryszard Kruk, Researcher and Project Manager, Tel +353-91-495213
sebastian.kruk@deri.org

Application procedure: Candidates are requested to submit a covering letter, CV (Word or PDF format only) and the names and addresses of at least three and not more than five referees via e-mail to;
hr.ie@deri.org


Bill is back

Just a short note, to share my state of mind.

Today, we’ve met Bill in the office. He came just for a short while, but it was plain to see – he does feel better than before.

I am very happy. I hope he will fully recover from his illness.

In the meantime, welcome back Bill.


3 years in DERI (and counting …)

It is hard to imagine, but it is precisely 3 years since I joined DERI Galway.
Man, … 3 years ago I was almost certain I will be packing myself, and heading home.
I would never actually thought that we are going to stay longer, and that these 3 years will be so full with various, colorful events.

Let’s try to sum up the projects first:
• I came here with a prototype of my semantic digital library (Elvis-DL), which I built at GUT; now JeromeDL, next step in evolution of Elvis-DL, (Adam many thanks for the hint on the name) is getting nearer to version 2.1, and is full with various components I’ve would never dreamed of. A lot of people contributed to the project; somehow everyone is gone now, and I have to start head-hunting again
• My idea of MarcOnt Initiative I brought we me that time, is still growing; thanks to Maciej, who took over from me, and our MarcOnt working group teams; from an idea of a collaborative ontology management environment (MarcOnt Portal), and bibliographic ontology (MarcOnt Ontology), with Marcin’s help we extended MarcOnt Initiative with MarcOnt Mediation Services and RDF Translator library. Piotr added Rule Generator to the stack of components.
• The quick hack (2 nights) of FOAFRealm library is also much alive; I did it before I came to DERI, and later presented at the FOAF Workshop in Galway. Based on the research, mine and D-FOAF working group, we’ve got enough stuff to put together version 2.0; Sławek, who took over from me on this, is now preparing the final version of FOAFRealm 2.0
• While morphing Elvis-DL into JeromeDL by, among the others, delivering support for multiple languages, I managed to prototype something that I wanted to do a long time before, ever since I worked with GUT – a collaborative space in a digital library. From the 3 components: shareable bookmarks annotated with established classification schemata, mini-blog, and resources ranking, the first one is now primarily identified with what I christened as Social Semantic Collaborative Filtering (SSCF). My prototype was simple and dirty, but got enough attention and we decided to give it a new face. Ever since then, Adam makes sure that SSCF looks better and better, and delivers more and more nice features, including support for SIOC, stored faceted navigation queries, del.icio.us bookmarks, and recommendation engine delivered by Daniel and Vinicius from PUC-Rio.
• In late December 2004 the idea of our own lightweight implementation of HyperCuP protocol was born. Thanks to Sławek and Paweł, we now have a pretty stable component, that has already empowered both JeromeDL and FOAFRealm in distributed computing capabilities.
• With eLITE project [see later] even more ideas and opportunities emerged. The first one to come was Didaskon project. Initiated as a GUT group project with great help from Adam, the project is currently being managed by Jacek (who also works on his SemPerKit and Copernicus). I hope in the near future we will hear about the first release, but till now, Didaskon already gave life to two spin-off projects:
• Informal Knowledge Harvester (IKHarvester) – delivered by Jarek to support aggregation of knowledge from various Social Semantic Information Sources, and delivering them as Learning Objects Metadata.
• IKAR (Informal Knowledge AdapteR) – delivered by Filip, allows to deliver auxiliary information on related resources, and toggle visibility of this information based on current level of the knowledge of the user
• Since both JeromeDL and SSCF were in desperate need of an annotation component that could seamlessly support both WordNet and various taxonomies, I hacked together
JOnto, which handles RDF representation of various knowledge organization systems, and delivers nice (?) AJAXy components to access this information.
• Last year, together with Stefan, we came with an idea of
TagsTreeMaps, as an alternative representation of TagCloud. We almost got TTM patented, but in the result, we are year late with publication process; I hope to get some interesting paper out within next month.
• In early fall 2006 Bill told me about his idea of HoneyComb
TM, which was so brilliant I had to give it a try. This is how another JavaScript-AJAX component emerged, giving me finally a concrete ground to finally build ….
• faceted navigation component –
MultiBeeBrowse. Don’t blame me for the name – when you put together honeycomb, faceted view, and busy bee (aghm, that is me ) you can’t expect anything else. To be frank, the idea of MBB was something I was waiting for the last 2 years. The early implementations of Jerome-Photo faceted navigation component, and a similar struggle with faceted component for SWSE (at the time I was an active member of the team), where not wrong, but they were missing bits and pieces; basically, they were missing collaborative space which would fit nicely to my idea of S3B [see later] services. Even though the current prototype might, and should be, improved in various places (hopefully Wladek will contribute here and there within his thesis) – I finally managed to close the loop of the …
Social Semantic Search and Browsing (S3B) – from the early start of my work on the PhD thesis I wanted to concentrate on this topic. Digital libraries seemed to be a perfect framework to investigate it. My MSc delivered semantic query expansion algorithm, which is now being refurbished by Jakub, Lukasz, and Mateusz, it already had both social and semantic touch. SSCF was all about social and semantics. I was missing one piece of this puzzle. I quickly learned that it was the faceted navigation. Yah, so what? I saw semantics, but where was the collaborative space? With MBB on board I am all set to finally do evaluation of this beast

I guess that would be it for software prototypes (for now at least …)

Working groups and master thesis:
Thanks to collaborative nature of both prof. Krawczyk and Stefan (should I say prof. Decker to match the context?) we managed to establish an ongoing exchange program. It consists of establishing 3-person group project at GUT, summer internship in DERI, another internship in DERI during 10th semester, and joint MSc diploma with thesis in English.
We are in the third year of this program now. The first 3 groups: W2W (JeromeDL), WMap (MarcOnt), and D-FOAF (FOAFRealm) gave foundations to Corrib Cluster Project. What has started as a joint R&D initiative between DERI Galway and GUT, slowly attracts other researchers, e.g., from prof. Hong-Gee Kim group.
I have already wrote about Didaskon (group project 2006). Currently members of 3rd group projects (JeromeDL 2, MarcOnt 2, and SQE) set up (2007) work with us in DERI. Good luck guys
I will not go in to too many details about the MSc diplomas.
You can easily find them here.

Conferences and exchange programs:
There was a lot of traveling for the last 3 years, and it would be hard to list it all here. But the most important visits (mainly for the development of my research) were:
• ISWC2004 – where I discovered that my extension to JeromeDL is actually a collaborative filtering component
• exchange visit to DERI Innsbruck – where I networked with many interesting people. Together with Kerstin we wrote a paper that received the Best Paper Award, and Axel and Michael had their contribution to JeromeDL, while we now research with Ying, and her team, on the tagging.
• ESWC2005 followed by KnowledgeWeb meeting, was a great opportunity to meet even more renown researchers.
• I will never forget DEXA2005, where I met Bernhard, with who we started building the Semantic Digital Libraries community – there results are quite encouraging: 3 tutorials (JCDL2006, WWW2007 (!), and ESWC2007), 1 workshop session (NKOS2006) and … a book with which I struggle at the moment.
• Finally, my exchange visit to PUC-Rio, where I worked with prof. Daniel Schwabe. The visit was so valuable, I wish it could be longer; on the other hand, I still struggle with implementing and evaluating all the ideas we crafted together with Daniel and his team .

I have started my adventure with DERI as a PhD student.
In January 2006, however, 5 of the aforementioned projects (JeromeDL, MarcOnt, FOAFRealm, SSCF, and HyperCuP) became the corner stones of the eLITE grant from Enterprise Ireland; thanks to this grant even more people can now work with me on my projects, and in January 2006 I was promoted from a PhD Student to a Researcher (Computer Science) , leading research on the Semantic Web and Social Networking technologies, in the newly established eLearning cluster.

Now, we created notitio.us, and I wonder what the future brings …